Cancer Data Science Pulse

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Headshot of Dr. Jennifer Moss

Former Fellow Shares NCI Experience with Geocoding and Patient Privacy

Find out what a previous fellow has to say about her experience with data science in an NCI fellowship, and how she applied what she learned to her cancer research career.

3D protein image. Shows interconnected blue strands, with one red strand in the middle. The red indicates a mutation, which resulted in a destabilized version of the protein.

Visualizing Genetic Mutations in Three-Dimensions—Pro-Tips From a Structural Biology Perspective

CBIIT’s series on data visualizations continues with a look at visualizing genetic data in a three-dimensional (3D) format. Here, Dr. Michael Sierk, a contractor with Essential Software, Inc., and Dr. Daoud Meerzaman from CBIIT’s Computational Genomics and Bioinformatics Branch show how they create visualizations in 3D using a new tool called 3DVizSNP.

Blue circle with smiley face representing a genomic datum point

NCI Brings Cancer Data to Life

Did you ever wonder what goes into making data ready for analysis by researchers around the world? In this video blog, meet "Datum," a single speck of genomic data chronicling how NCI supports cancer research by bringing data to life.

Artists conception of federated learning. Shows four separate buildings linked together to form a center "brain." The idea is to show how people can be in different places and still contribute equally to research.

Federated Learning—A Solution for Democratizing Data for Cancer Research?

Federated learning (FL) might well be the next paradigm shift in democratizing vast amounts of data from many data sources for use in cancer research. FL offers a decentralized, but collective, approach to using data to better understand cancer.

Examples of data visualization showing a circular heat map and a PCA biplot.

Visualizing Data Using Circular Heatmaps and Biplots—Pro-Tips From NCI Researchers

We’re continuing our blog series on data visualizations with a look at circular heatmaps and biplots. This blog features images and tips from Drs. Arashdeep Singh and Sridhar Hannehalli of NCI’s Center for Cancer Research.

Mitelman Database Icon: Half genomic helix, half chromosome.

How the Mitelman Database Can Help You Explore Genomic Abnormalities

Are you researching genomic abnormalities? Bioinformatician Deena Bleich gives an overview of the online tool, “Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer,” and how it can help you analyze genomic data.

blue circle with orange flame in the middle of a light blue cloud icon to represent the FireCloud icon. Background shows multi-colored stacked rectangles to represent data

FireCloud: A Secure Platform For Data Analysis Powered by Terra

In this blog, we’re spotlighting how researchers can leverage FireCloud, one of NCI’s Cloud Resources, for accessing data, running analysis, and collaborating with others in the cancer research community.

The 12 Blogs of CBIIT on wintery background

The 12 Blogs of CBIIT—Your Favorite Data Science Reads from 2022

Read the blogs that topped our charts in 2022 and see if your favorite made #1!

Computer-generated 3D model of breast cancer.

Your Guide to NCI Data Science Resources for Breast Cancer Research

As NCI recognizes Breast Cancer Awareness Month this October, we highlight several data science resources to assist in your breast cancer research.

Photo of Dr. Alida Palmisano

Visualizing RNA-seq Data—Pro-Tips From an NCI Bioinformatics Engineer

Looking for ways to visualize your data? We asked data scientists to show us their favorite visualizations. Here, Dr. Alida Palmisano of NCI's Computational and Systems Biology Branch shares her ideas for visualizing complex single-cell RNA sequencing data.

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