Cancer Data Science Pulse

The Cancer Data Science Pulse blog provides insights on trends, policies, initiatives, and innovation in the data science and cancer research communities from professionals dedicated to building a national cancer data ecosystem that enables new discoveries and reduces the burden of cancer.

NCI’s Dr. Erika Kim and Dr. Chris Kinsinger discuss how the Proteomic Data Commons (PDC) aids cancer researchers in accessing and analyzing proteomic data. The PDC is an integral part of NCI’s Cancer Research Data Commons (CRDC) as it gives researchers access to three types of proteomic data: mass spectra, identified peptides, and protein reports, as well as clinical, biospecimen, and other metadata. The PDC is available for queries and analysis of publicly accessible datasets.

CBIIT Director, Tony Kerlavage, discusses his role, CBIIT’s responsibilities and opportunities within the realm of cancer research, and his vision for expanding informatics, IT, collaboration, and data sharing to find treatments, improve outcomes, and make the lives of cancer patients and their families better.

Dr. Nathalie Pochet highlights the Informatics Technology for Cancer Research Program and the support it provides for informatics tools development, including the *AMARETTO framework that is being leveraged to identify novel mechanisms of viral carcinogenesis.

NCI funding opportunity announcement for an Informatics Technology for Cancer Research (ITCR) Education Resource. The ITCR Education Resource will be a new, overarching component of the ITCR program, with the overall mission to conduct activities that engage the research and informatics community to use and extend the ITCR technologies.

The Imaging Data Commons (IDC) has been awarded to a consortium led by investigators from the Department of Radiology at Brigham and Women’s Hospital and Harvard Medical School. The IDC will house multi-modal imaging data and make them available for use by the broader cancer research community.

Staff from the National Cancer Institute's (NCI) Center for Biomedical Informatics and Information Technology (CBIIT) provide scientific and business-related reading recommendations they have found to be inspiring or useful throughout their careers.